Pan-Genome Analysis Web Server

A Better Way to Bacterial Pan-genome Analysis

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Blast off with Bootstrap
PGAP

  • Orthologs clusters identification among multiple genomes
  • Pan-genome analysis for given strains
  • Functional genes variation and SNP calling among given strains
  • Evolutionary analysis based on pan-genome and SNP data
  • Orthologs clusters function analysis
  •  

    Complete genome or Draft genome

Analyze
PGAP-X

  • Genome Alignment for given strains
  • Orthologous gene identification for given strains
  • Genome variation analysis
  • Pan-genome analysis
  • Data visualization for gene distribution by conservation, genome structure and genetic variants

    Complete genome only

Analyze

Feature-rich

Support five analytic functions. Both dynamic visual figures and detailed pure text files are provided.

Easy to Use

Intutive and user-friendly interface, one-click setting of parameters and detailed users manual. Start first calculation within a minute.

Fast and Efficient

Calculation based on super computers of SCCAS, checking your tasks anytime and anywhere.

Publications

Please cite

  • PGAP: pan-genomes analysis pipeline. Bioinformatics,2012,28(3):416-8. [PMID= 22130594]
  • PanGP: a tool for quickly analyzing bacterial pan-genome profile. Bioinformatics,2014,30(9):1297-9. [PMID= 24420766]
  • PGAP-X: Extension on pan-genome analysis pipeline. BMC Genomics,2018,19(Suppl 1):36.[PMID= 29363431]
  • PGAweb: A Web Server for Bacterial Pan-Genome Analysis. Front Microbiol,2018,9:1910.[PMID= 30186253]